Genome Meta Information: Actinomyces oris T14V (GCA_001553935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001553935.1 | ||
| HOMD Taxon-ID | HMT-043 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-043 Actinomyces oris clade-043 T14V | ||
| Strain or Isolate | T14V | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces oris_A |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 357.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,042,917 (bp) | ||
| GC Percentage | 68.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/935/GCA_001553935.1_ASM155393v1 | ||
| CDS | 2461 | ||
| Genes | 2537 | ||
| mRNA | 2537 | ||
| misc RNA | 14 | ||
| rRNA | 9 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.41 % | ||
| CheckM Completeness | 99.76 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.3 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM155393v1 |
| GenBank Assembly Accession | GCA_001553935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001553935.1 [NCBI] |
| BioSample | SAMN04435864 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2016-01-22T19:16:05.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 544580 |
| Isolation Source | supragingival dental plaque |
| Geo Location | USA: Boston, MA |
