Genome Meta Information: Stenotrophomonas nitritireducens YM1 (GCA_001562215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001562215.1 | ||
| HOMD Taxon-ID | HMT-0037 | ||
| Species Name (in use by HOMD) | Stenotrophomonas nitritireducens | ||
| Organism Name (as deposited) | HMT-037 Stenotrophomonas nitritireducens YM1 | ||
| Strain or Isolate | YM1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas; s__Stenotrophomonas nitritireducens_A |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 4,541,594 (bp) | ||
| GC Percentage | 63.83 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/562/215/GCA_001562215.1_ASM156221v1 | ||
| CDS | 3867 | ||
| Genes | 3974 | ||
| mRNA | 3974 | ||
| misc RNA | 21 | ||
| rRNA | 14 | ||
| tRNA | 71 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 92.05 % | ||
| CheckM Contamination | 3.57 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM156221v1 |
| GenBank Assembly Accession | GCA_001562215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001562215.1 [NCBI] |
| BioSample | SAMN04451766 [NCBI] |
| BioProject | PRJNA310387 [NCBI] |
| Submitter | Korea Polar Research Institute |
| Submission Date | 2016-02-02T03:06:03.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1793721 |
| Isolation Source | soil |
| Geo Location | South Korea |
