Genome Meta Information: Streptococcus sinensis DD04 (GCA_001578725.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001578725.1 | ||
| HOMD Taxon-ID | HMT-0767 | ||
| Species Name (in use by HOMD) | Streptococcus sinensis | ||
| Organism Name (as deposited) | HMT-767 Streptococcus sinensis DD04 | ||
| Strain or Isolate | DD04 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sinensis |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 15.23 | ||
| Contigs |
|
||
| Total Sequence Length | 2,199,747 (bp) | ||
| GC Percentage | 44.61 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/578/725/GCA_001578725.1_ASM157872v1 | ||
| CDS | 2015 | ||
| Genes | 2088 | ||
| mRNA | 2088 | ||
| misc RNA | 33 | ||
| rRNA | 3 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.36 % | ||
| CheckM Contamination | 1.01 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM157872v1 |
| GenBank Assembly Accession | GCA_001578725.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001578725.1 [NCBI] |
| BioSample | SAMN04324323 [NCBI] |
| BioProject | PRJNA304333 [NCBI] |
| Submitter | University of Kaiserslautern |
| Submission Date | 2015-12-08T04:36:02.770 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LQOH01 |
| NCBI TaxID | 1776578 |
| Isolation Source | nose |
| Geo Location | Germany: Goettingen, German Pr |
