Genome Meta Information: Streptococcus infantis DD18 (GCA_001579645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001579645.1 | ||
| HOMD Taxon-ID | HMT-0431 | ||
| Species Name (in use by HOMD) | Streptococcus infantis | ||
| Organism Name (as deposited) | HMT-431 Streptococcus infantis clade-431 DD18 | ||
| Strain or Isolate | DD18 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus infantis_E |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 14.72 | ||
| Contigs |
|
||
| Total Sequence Length | 2,111,724 (bp) | ||
| GC Percentage | 41.34 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/579/645/GCA_001579645.1_ASM157964v1 | ||
| CDS | 1945 | ||
| Genes | 2027 | ||
| mRNA | 0 | ||
| misc RNA | 40 | ||
| rRNA | 3 | ||
| tRNA | 38 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 89.03 % | ||
| CheckM Completeness | 96.67 % | ||
| CheckM Contamination | 4.96 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM157964v1 |
| GenBank Assembly Accession | GCA_001579645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001579645.1 [NCBI] |
| BioSample | SAMN04325030 [NCBI] |
| BioProject | PRJNA304333 [NCBI] |
| Submitter | University of Kaiserslautern |
| Submission Date | 2015-12-08T09:10:03.226 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LQZF01 |
| NCBI TaxID | 68892 |
| Isolation Source | oral cavity |
| Geo Location | Cote dIvoire: Thai National Pa |
