Genome Meta Information: Fusobacterium necrophorum LS_1280 (GCA_001597325.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001597325.1 | ||
| HOMD Taxon-ID | HMT-0690 | ||
| Species Name (in use by HOMD) | Fusobacterium necrophorum | ||
| Organism Name (as deposited) | HMT-690 Fusobacterium necrophorum LS_1280 | ||
| Strain or Isolate | LS_1280 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C; s__Fusobacterium_C necrophorum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 60 | ||
| Contigs |
|
||
| Total Sequence Length | 2,098,951 (bp) | ||
| GC Percentage | 35.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/597/325/GCA_001597325.1_ASM159732v1 | ||
| CDS | 1978 | ||
| Genes | 2041 | ||
| mRNA | 2041 | ||
| misc RNA | 16 | ||
| rRNA | 3 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.53 % | ||
| CheckM Completeness | 96.44 % | ||
| CheckM Contamination | 2.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM159732v1 |
| GenBank Assembly Accession | GCA_001597325.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001597325.1 [NCBI] |
| BioSample | SAMN04569319 [NCBI] |
| BioProject | PRJNA315619 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2016-03-19T17:14:05.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LVET01 |
| NCBI TaxID | 143387 |
| Isolation Source | blood |
| Geo Location | Denmark |
