Genome Meta Information: Streptococcus mutans ATCC 55676 (GCA_001625005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001625005.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans ATCC 55676 | ||
| Strain or Isolate | ATCC 55676 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 525 | ||
| Contigs |
|
||
| Total Sequence Length | 2,050,195 (bp) | ||
| GC Percentage | 36.64 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/625/005/GCA_001625005.1_ASM162500v1 | ||
| CDS | 1908 | ||
| Genes | 2012 | ||
| mRNA | 2012 | ||
| misc RNA | 45 | ||
| rRNA | 8 | ||
| tRNA | 51 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 99.32 % | ||
| CheckM Completeness | 98.46 % | ||
| CheckM Contamination | 0.66 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM162500v1 |
| GenBank Assembly Accession | GCA_001625005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001625005.1 [NCBI] |
| BioSample | SAMN04420782 [NCBI] |
| BioProject | PRJNA309131 [NCBI] |
| Submitter | Texas A&M |
| Submission Date | 2016-01-19T09:56:02.330 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LTAK01 |
| NCBI TaxID | 1309 |
| Isolation Source | oral cavity |
| Geo Location | USA: Boston |
