Genome Meta Information: Corynebacterium afermentans LCDC880199 (GCA_001639025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001639025.1 | ||
| HOMD Taxon-ID | HMT-0030 | ||
| Species Name (in use by HOMD) | Corynebacterium afermentans | ||
| Organism Name (as deposited) | HMT-030 Corynebacterium afermentans LCDC880199 | ||
| Strain or Isolate | LCDC880199 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium afermentans |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 85 | ||
| Contigs |
|
||
| Total Sequence Length | 2,345,615 (bp) | ||
| GC Percentage | 64.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/639/025/GCA_001639025.1_ASM163902v1 | ||
| CDS | 2163 | ||
| Genes | 2232 | ||
| mRNA | 2232 | ||
| misc RNA | 8 | ||
| rRNA | 3 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.4 % | ||
| CheckM Contamination | 0.72 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM163902v1 |
| GenBank Assembly Accession | GCA_001639025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001639025.1 [NCBI] |
| BioSample | SAMN04893626 [NCBI] |
| BioProject | PRJNA319541 [NCBI] |
| Submitter | Public Health Agency of Canada |
| Submission Date | 2016-04-25T13:01:02.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LXGG01 |
| NCBI TaxID | 144183 |
| Isolation Source | |
| Geo Location | Canada: Newfoundland |
