Genome Meta Information: Haemophilus ducreyi GHA5 (GCA_001647875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001647875.1 | ||
| HOMD Taxon-ID | HMT-0821 | ||
| Species Name (in use by HOMD) | Haemophilus ducreyi | ||
| Organism Name (as deposited) | HMT-821 Haemophilus ducreyi GHA5 | ||
| Strain or Isolate | GHA5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B; s__Haemophilus_B ducreyi |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 257 | ||
| Contigs |
|
||
| Total Sequence Length | 1,738,559 (bp) | ||
| GC Percentage | 38.18 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/647/875/GCA_001647875.1_ASM164787v1 | ||
| CDS | 1731 | ||
| Genes | 1821 | ||
| mRNA | 1821 | ||
| misc RNA | 21 | ||
| rRNA | 19 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.92 % | ||
| CheckM Completeness | 95.39 % | ||
| CheckM Contamination | 1.19 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM164787v1 |
| GenBank Assembly Accession | GCA_001647875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001647875.1 [NCBI] |
| BioSample | SAMN04632447 [NCBI] |
| BioProject | PRJNA318024 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2016-04-11T13:29:05.450 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 730 |
| Isolation Source | cutaneous ulcer |
| Geo Location | Ghana |
