Genome Meta Information: Eikenella corrodens NML04-0072 (GCA_001648245.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001648245.1 | ||
| HOMD Taxon-ID | HMT-0577 | ||
| Species Name (in use by HOMD) | Eikenella corrodens | ||
| Organism Name (as deposited) | HMT-577 Eikenella corrodens NML04-0072 | ||
| Strain or Isolate | NML04-0072 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella; s__Eikenella corrodens |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 65.1 | ||
| Contigs |
|
||
| Total Sequence Length | 2,423,039 (bp) | ||
| GC Percentage | 55.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/648/245/GCA_001648245.1_ASM164824v1 | ||
| CDS | 2348 | ||
| Genes | 2412 | ||
| mRNA | 2412 | ||
| misc RNA | 11 | ||
| rRNA | 3 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.32 % | ||
| CheckM Completeness | 95.74 % | ||
| CheckM Contamination | 0.56 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM164824v1 |
| GenBank Assembly Accession | GCA_001648245.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001648245.1 [NCBI] |
| BioSample | SAMN04931631 [NCBI] |
| BioProject | PRJNA310649 [NCBI] |
| Submitter | Public Health Agency of Canada |
| Submission Date | 2016-05-02T13:12:03.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LXSG01 |
| NCBI TaxID | 539 |
| Isolation Source | anastomosis |
| Geo Location | Canada: Winnipeg |
