Genome Meta Information: Eikenella corrodens NML130388 (GCA_001648315.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001648315.1 | ||
| HOMD Taxon-ID | HMT-0577 | ||
| Species Name (in use by HOMD) | Eikenella corrodens | ||
| Organism Name (as deposited) | HMT-577 Eikenella corrodens NML130388 | ||
| Strain or Isolate | NML130388 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella; s__Eikenella corrodens |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 104 | ||
| Contigs |
|
||
| Total Sequence Length | 2,188,187 (bp) | ||
| GC Percentage | 55.87 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/648/315/GCA_001648315.1_ASM164831v1 | ||
| CDS | 2115 | ||
| Genes | 2180 | ||
| mRNA | 2180 | ||
| misc RNA | 13 | ||
| rRNA | 5 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.04 % | ||
| CheckM Completeness | 95.74 % | ||
| CheckM Contamination | 0.5 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM164831v1 |
| GenBank Assembly Accession | GCA_001648315.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001648315.1 [NCBI] |
| BioSample | SAMN04931633 [NCBI] |
| BioProject | PRJNA310649 [NCBI] |
| Submitter | Public Health Agency of Canada |
| Submission Date | 2016-05-02T13:12:03.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LXSI01 |
| NCBI TaxID | 539 |
| Isolation Source | peritoneal fluid |
| Geo Location | Canada: St John |
