Genome Meta Information: Haemophilus aegyptius CCUG 628 (GCA_001679305.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001679305.1 | ||
| HOMD Taxon-ID | HMT-0535 | ||
| Species Name (in use by HOMD) | Haemophilus aegyptius | ||
| Organism Name (as deposited) | HMT-535 Haemophilus aegyptius CCUG 628 | ||
| Strain or Isolate | CCUG 628 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 182 | ||
| Contigs |
|
||
| Total Sequence Length | 1,856,412 (bp) | ||
| GC Percentage | 37.92 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/305/GCA_001679305.1_ASM167930v1 | ||
| CDS | 1841 | ||
| Genes | 1927 | ||
| mRNA | 1927 | ||
| misc RNA | 36 | ||
| rRNA | 4 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.72 % | ||
| CheckM Completeness | 98.52 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM167930v1 |
| GenBank Assembly Accession | GCA_001679305.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001679305.1 [NCBI] |
| BioSample | SAMN05219235 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2016-06-09T09:34:03.690 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LZPG01 |
| NCBI TaxID | 197575 |
| Isolation Source | Unknown |
| Geo Location | USA: New York |
