Genome Meta Information: Haemophilus parainfluenzae CCUG 62654 (GCA_001679325.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001679325.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae CCUG 62654 | ||
| Strain or Isolate | CCUG 62654 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_AD |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 89 | ||
| Contigs |
|
||
| Total Sequence Length | 2,129,377 (bp) | ||
| GC Percentage | 39.25 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/325/GCA_001679325.1_ASM167932v1 | ||
| CDS | 2000 | ||
| Genes | 2079 | ||
| mRNA | 2079 | ||
| misc RNA | 26 | ||
| rRNA | 4 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.4 % | ||
| CheckM Completeness | 99.74 % | ||
| CheckM Contamination | 0.32 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM167932v1 |
| GenBank Assembly Accession | GCA_001679325.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001679325.1 [NCBI] |
| BioSample | SAMN05219282 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2016-06-09T09:34:38.976 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LZMX01 |
| NCBI TaxID | 729 |
| Isolation Source | urethra |
| Geo Location | Denmark: Arhus |
