Genome Meta Information: Haemophilus parainfluenzae CCUG 60358 (GCA_001679485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001679485.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae CCUG 60358 | ||
| Strain or Isolate | CCUG 60358 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D sp001679485 |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 170 | ||
| Contigs |
|
||
| Total Sequence Length | 2,091,064 (bp) | ||
| GC Percentage | 39.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/485/GCA_001679485.1_ASM167948v1 | ||
| CDS | 2022 | ||
| Genes | 2109 | ||
| mRNA | 2109 | ||
| misc RNA | 30 | ||
| rRNA | 7 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.77 % | ||
| CheckM Contamination | 1.28 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM167948v1 |
| GenBank Assembly Accession | GCA_001679485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001679485.1 [NCBI] |
| BioSample | SAMN05225442 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2016-06-10T08:55:04.456 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LZOZ01 |
| NCBI TaxID | 1859695 |
| Isolation Source | urine |
| Geo Location | Sweden: Vastra Gotaland, Gothe |
