Genome Meta Information: Streptococcus oralis W10853 (GCA_001683375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001683375.1 | ||
| HOMD Taxon-ID | HMT-0707 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-707 Streptococcus oralis subsp. oralis W10853 | ||
| Strain or Isolate | W10853 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_S |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 23 | ||
| Contigs |
|
||
| Total Sequence Length | 2,013,158 (bp) | ||
| GC Percentage | 41.25 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/683/375/GCA_001683375.1_ASM168337v1 | ||
| CDS | 1902 | ||
| Genes | 2005 | ||
| mRNA | 2005 | ||
| misc RNA | 39 | ||
| rRNA | 12 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.07 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM168337v1 |
| GenBank Assembly Accession | GCA_001683375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001683375.1 [NCBI] |
| BioSample | SAMN03897726 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2015-07-23T20:18:24.000 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 712624 |
| Isolation Source | Subgingival plaque, gingival sulcus |
| Geo Location | United Kingdom: London |
