Genome Meta Information: Bifidobacterium animalis YL2 (GCA_001688645.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001688645.2 | ||
| HOMD Taxon-ID | HMT-0895 | ||
| Species Name (in use by HOMD) | Bifidobacterium animalis | ||
| Organism Name (as deposited) | HMT-895 Bifidobacterium animalis YL2 | ||
| Strain or Isolate | YL2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium animalis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,027,369 (bp) | ||
| GC Percentage | 60.21 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/688/645/GCA_001688645.2_ASM168864v2 | ||
| CDS | 1631 | ||
| Genes | 1707 | ||
| mRNA | 1707 | ||
| misc RNA | 10 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.97 % | ||
| CheckM Completeness | 95.12 % | ||
| CheckM Contamination | 3.15 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM168864v2 |
| GenBank Assembly Accession | GCA_001688645.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001688645.2 [NCBI] |
| BioSample | SAMN04621611 [NCBI] |
| BioProject | PRJNA317592 [NCBI] |
| Submitter | University of Bern |
| Submission Date | 2016-04-06T15:45:03.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 302912 |
| Isolation Source | |
| Geo Location | Switzerland: Bern |
