Genome Meta Information: Akkermansia muciniphila YL44 (GCA_001688765.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001688765.2 | ||
| HOMD Taxon-ID | HMT-963 | ||
| Species Name (in use by HOMD) | Akkermansia muciniphila | ||
| Organism Name (as deposited) | HMT-963 Akkermansia muciniphila YL44 | ||
| Strain or Isolate | YL44 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia; s__Akkermansia muciniphila |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | |||
| Contigs |
|
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| Total Sequence Length | 2,745,278 (bp) | ||
| GC Percentage | 55.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/688/765/GCA_001688765.2_ASM168876v2 | ||
| CDS | 2282 | ||
| Genes | 2352 | ||
| mRNA | 2352 | ||
| misc RNA | 6 | ||
| rRNA | 9 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.91 % | ||
| CheckM Completeness | 97.96 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.27 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM168876v2 |
| GenBank Assembly Accession | GCA_001688765.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001688765.2 [NCBI] |
| BioSample | SAMN04621615 [NCBI] |
| BioProject | PRJNA317592 [NCBI] |
| Submitter | University of Bern |
| Submission Date | 2016-04-06T15:45:03.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 239935 |
| Isolation Source | |
| Geo Location | Switzerland: Bern |
