Genome Meta Information: Cutibacterium avidum UCD-PD2 (GCA_001692965.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001692965.1 | ||
| HOMD Taxon-ID | HMT-0552 | ||
| Species Name (in use by HOMD) | Cutibacterium avidum | ||
| Organism Name (as deposited) | HMT-552 Cutibacterium avidum UCD-PD2 | ||
| Strain or Isolate | UCD-PD2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium avidum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 76 | ||
| Contigs |
|
||
| Total Sequence Length | 2,667,287 (bp) | ||
| GC Percentage | 63.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/692/965/GCA_001692965.1_ASM169296v1 | ||
| CDS | 2410 | ||
| Genes | 2494 | ||
| mRNA | 2494 | ||
| misc RNA | 30 | ||
| rRNA | 5 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.35 % | ||
| CheckM Completeness | 91.63 % | ||
| CheckM Contamination | 5.77 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM169296v1 |
| GenBank Assembly Accession | GCA_001692965.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001692965.1 [NCBI] |
| BioSample | SAMN05181546 [NCBI] |
| BioProject | PRJNA323590 [NCBI] |
| Submitter | UC Davis |
| Submission Date | 2016-05-27T13:27:02.930 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LYSN01 |
| NCBI TaxID | 33010 |
| Isolation Source | anal gland |
| Geo Location | USA: Oakland, CA |
