Genome Meta Information: Cutibacterium avidum DPC 6544 (GCA_001714705.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001714705.1 | ||
| HOMD Taxon-ID | HMT-0552 | ||
| Species Name (in use by HOMD) | Cutibacterium avidum | ||
| Organism Name (as deposited) | HMT-552 Cutibacterium avidum DPC 6544 | ||
| Strain or Isolate | DPC 6544 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium avidum |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 287.8 | ||
| Contigs |
|
||
| Total Sequence Length | 2,729,848 (bp) | ||
| GC Percentage | 63.43 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/714/705/GCA_001714705.1_ASM171470v1 | ||
| CDS | 2462 | ||
| Genes | 2544 | ||
| mRNA | 2544 | ||
| misc RNA | 24 | ||
| rRNA | 9 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.98 % | ||
| CheckM Completeness | 90.55 % | ||
| CheckM Contamination | 5.14 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM171470v1 |
| GenBank Assembly Accession | GCA_001714705.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001714705.1 [NCBI] |
| BioSample | SAMN05579890 [NCBI] |
| BioProject | PRJNA339124 [NCBI] |
| Submitter | University College Cork |
| Submission Date | 2016-08-16T11:00:04.726 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 33010 |
| Isolation Source | infant fecal swab |
| Geo Location | Ireland |
