Genome Meta Information: Corynebacterium jeikeium ICIS 53 (GCA_001722255.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001722255.1 | ||
| HOMD Taxon-ID | HMT-0047 | ||
| Species Name (in use by HOMD) | Corynebacterium jeikeium | ||
| Organism Name (as deposited) | HMT-031 Corynebacterium amycolatum ICIS 53 | ||
| Strain or Isolate | ICIS 53 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium jeikeium_D |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,460,257 (bp) | ||
| GC Percentage | 58.98 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/722/255/GCA_001722255.1_ASM172225v1 | ||
| CDS | 2126 | ||
| Genes | 2200 | ||
| mRNA | 2200 | ||
| misc RNA | 13 | ||
| rRNA | 7 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.8 % | ||
| CheckM Completeness | 99.33 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM172225v1 |
| GenBank Assembly Accession | GCA_001722255.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001722255.1 [NCBI] |
| BioSample | SAMN05601680 [NCBI] |
| BioProject | PRJNA339674 [NCBI] |
| Submitter | Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences |
| Submission Date | 2016-08-22T04:45:03.277 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | MIFV01 |
| NCBI TaxID | 43765 |
| Isolation Source | healthy female urogenital tract |
| Geo Location | Russia |
