Genome Meta Information: Eikenella corrodens HMSC061C02 (GCA_001809035.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001809035.1 | ||
| HOMD Taxon-ID | HMT-0577 | ||
| Species Name (in use by HOMD) | Eikenella corrodens | ||
| Organism Name (as deposited) | HMT-577 Eikenella corrodens HMSC061C02 | ||
| Strain or Isolate | HMSC061C02 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella; s__Eikenella corrodens |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 175 | ||
| Contigs |
|
||
| Total Sequence Length | 2,284,273 (bp) | ||
| GC Percentage | 55.86 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/035/GCA_001809035.1_ASM180903v1 | ||
| CDS | 2231 | ||
| Genes | 2296 | ||
| mRNA | 2296 | ||
| misc RNA | 13 | ||
| rRNA | 3 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 95.52 % | ||
| CheckM Contamination | 0.49 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM180903v1 |
| GenBank Assembly Accession | GCA_001809035.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001809035.1 [NCBI] |
| BioSample | SAMN04495803 [NCBI] |
| BioProject | PRJNA296148 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-16T13:05:08.600 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTKM01 |
| NCBI TaxID | 1715021 |
| Isolation Source | trach aspirate |
| Geo Location | |
