Genome Meta Information: Haemophilus parainfluenzae HMSC061E01 (GCA_001810345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001810345.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae HMSC061E01 | ||
| Strain or Isolate | HMSC061E01 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D sp927911595 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 205 | ||
| Contigs |
|
||
| Total Sequence Length | 1,948,914 (bp) | ||
| GC Percentage | 39.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/345/GCA_001810345.1_ASM181034v1 | ||
| CDS | 1852 | ||
| Genes | 1928 | ||
| mRNA | 1928 | ||
| misc RNA | 25 | ||
| rRNA | 4 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.44 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181034v1 |
| GenBank Assembly Accession | GCA_001810345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001810345.1 [NCBI] |
| BioSample | SAMN04477561 [NCBI] |
| BioProject | PRJNA296340 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-06T08:05:59.190 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTHY01 |
| NCBI TaxID | 1715211 |
| Isolation Source | sputum |
| Geo Location | |
