Genome Meta Information: Actinomyces oris HMSC075C01 (GCA_001812965.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001812965.1 | ||
| HOMD Taxon-ID | HMT-144 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-144 Actinomyces oris clade-144 HMSC075C01 | ||
| Strain or Isolate | HMSC075C01 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces acetigenes |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 122.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,272,120 (bp) | ||
| GC Percentage | 68.26 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/812/965/GCA_001812965.1_ASM181296v1 | ||
| CDS | 2684 | ||
| Genes | 2756 | ||
| mRNA | 2756 | ||
| misc RNA | 14 | ||
| rRNA | 6 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.84 % | ||
| CheckM Contamination | 0.95 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.11 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181296v1 |
| GenBank Assembly Accession | GCA_001812965.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001812965.1 [NCBI] |
| BioSample | SAMN04480050 [NCBI] |
| BioProject | PRJNA300037 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-08T12:05:23.860 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTXO01 |
| NCBI TaxID | 1739387 |
| Isolation Source | abscess l cheek |
| Geo Location | |
