Genome Meta Information: Haemophilus parainfluenzae HMSC073C03 (GCA_001814055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001814055.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae HMSC073C03 | ||
| Strain or Isolate | HMSC073C03 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_M |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 194 | ||
| Contigs |
|
||
| Total Sequence Length | 2,007,726 (bp) | ||
| GC Percentage | 39.35 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/814/055/GCA_001814055.1_ASM181405v1 | ||
| CDS | 1934 | ||
| Genes | 2012 | ||
| mRNA | 2012 | ||
| misc RNA | 29 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.67 % | ||
| CheckM Contamination | 0.31 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181405v1 |
| GenBank Assembly Accession | GCA_001814055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001814055.1 [NCBI] |
| BioSample | SAMN04480373 [NCBI] |
| BioProject | PRJNA300102 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-08T13:05:24.583 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTVN01 |
| NCBI TaxID | 1739452 |
| Isolation Source | tracheal aspirate |
| Geo Location | |
