Genome Meta Information: Corynebacterium amycolatum HMSC073H12 (GCA_001837775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001837775.1 | ||
| HOMD Taxon-ID | HMT-0031 | ||
| Species Name (in use by HOMD) | Corynebacterium amycolatum | ||
| Organism Name (as deposited) | HMT-031 Corynebacterium amycolatum HMSC073H12 | ||
| Strain or Isolate | HMSC073H12 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium amycolatum |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 155 | ||
| Contigs |
|
||
| Total Sequence Length | 2,473,368 (bp) | ||
| GC Percentage | 58.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/837/775/GCA_001837775.1_ASM183777v1 | ||
| CDS | 2131 | ||
| Genes | 2198 | ||
| mRNA | 2198 | ||
| misc RNA | 12 | ||
| rRNA | 2 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.49 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM183777v1 |
| GenBank Assembly Accession | GCA_001837775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001837775.1 [NCBI] |
| BioSample | SAMN04498696 [NCBI] |
| BioProject | PRJNA296315 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-18T16:05:25.177 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTOO01 |
| NCBI TaxID | 1715187 |
| Isolation Source | vaginal/rectal |
| Geo Location | |
