Genome Meta Information: Corynebacterium amycolatum HMSC074C04 (GCA_001838295.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001838295.1 | ||
| HOMD Taxon-ID | HMT-0031 | ||
| Species Name (in use by HOMD) | Corynebacterium amycolatum | ||
| Organism Name (as deposited) | HMT-031 Corynebacterium amycolatum HMSC074C04 | ||
| Strain or Isolate | HMSC074C04 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium amycolatum |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 139 | ||
| Contigs |
|
||
| Total Sequence Length | 2,442,160 (bp) | ||
| GC Percentage | 58.79 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/838/295/GCA_001838295.1_ASM183829v1 | ||
| CDS | 2176 | ||
| Genes | 2245 | ||
| mRNA | 2245 | ||
| misc RNA | 14 | ||
| rRNA | 1 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 94.07 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM183829v1 |
| GenBank Assembly Accession | GCA_001838295.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001838295.1 [NCBI] |
| BioSample | SAMN04498698 [NCBI] |
| BioProject | PRJNA300164 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-18T16:05:25.267 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LWPW01 |
| NCBI TaxID | 1739514 |
| Isolation Source | vaginal/rectal |
| Geo Location | |
