Genome Meta Information: Streptococcus oralis SC15-3744 (GCA_001885595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001885595.1 | ||
| HOMD Taxon-ID | HMT-0707 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-707 Streptococcus oralis subsp. oralis SC15-3744 | ||
| Strain or Isolate | SC15-3744 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_H |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 88 | ||
| Contigs |
|
||
| Total Sequence Length | 1,934,082 (bp) | ||
| GC Percentage | 41.06 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/885/595/GCA_001885595.1_ASM188559v1 | ||
| CDS | 1812 | ||
| Genes | 1917 | ||
| mRNA | 1917 | ||
| misc RNA | 41 | ||
| rRNA | 7 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.65 % | ||
| CheckM Completeness | 99.11 % | ||
| CheckM Contamination | 0.68 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM188559v1 |
| GenBank Assembly Accession | GCA_001885595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001885595.1 [NCBI] |
| BioSample | SAMN05371533 [NCBI] |
| BioProject | PRJNA328451 [NCBI] |
| Submitter | Public Health Agency of Canada |
| Submission Date | 2016-07-11T10:39:02.857 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | MBDM01 |
| NCBI TaxID | 1303 |
| Isolation Source | unknown |
| Geo Location | Canada: Alberta |
