Genome Meta Information: Enterococcus casseliflavus DSM 20680 (GCA_001885845.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001885845.1 | ||
| HOMD Taxon-ID | HMT-0801 | ||
| Species Name (in use by HOMD) | Enterococcus casseliflavus | ||
| Organism Name (as deposited) | HMT-801 Enterococcus casseliflavus DSM 20680 | ||
| Strain or Isolate | DSM 20680 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D; s__Enterococcus_D casseliflavus |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,472,622 (bp) | ||
| GC Percentage | 42.41 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/885/845/GCA_001885845.1_ASM188584v1 | ||
| CDS | 3304 | ||
| Genes | 3394 | ||
| mRNA | 3394 | ||
| misc RNA | 53 | ||
| rRNA | 3 | ||
| tRNA | 33 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.13 % | ||
| CheckM Contamination | 1.09 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM188584v1 |
| GenBank Assembly Accession | GCA_001885845.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001885845.1 [NCBI] |
| BioSample | SAMN03267167 [NCBI] |
| BioProject | PRJNA270385 [NCBI] |
| Submitter | Inner Mongolia Agricultural University |
| Submission Date | 2014-12-16T21:26:47.433 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JXKK01 |
| NCBI TaxID | 37734 |
| Isolation Source | plants |
| Geo Location | missing |
