Genome Meta Information: Delftia acidovorans HK171 (GCA_001886655.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001886655.1 | ||
| HOMD Taxon-ID | HMT-0023 | ||
| Species Name (in use by HOMD) | Delftia acidovorans | ||
| Organism Name (as deposited) | HMT-023 Delftia acidovorans HK171 | ||
| Strain or Isolate | HK171 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas; s__Comamonas acidovorans |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 223 | ||
| Contigs |
|
||
| Total Sequence Length | 6,430,384 (bp) | ||
| GC Percentage | 66.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/886/655/GCA_001886655.1_ASM188665v1 | ||
| CDS | 5661 | ||
| Genes | 5851 | ||
| mRNA | 5851 | ||
| misc RNA | 89 | ||
| rRNA | 15 | ||
| tRNA | 85 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.52 % | ||
| CheckM Contamination | 0.68 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM188665v1 |
| GenBank Assembly Accession | GCA_001886655.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001886655.1 [NCBI] |
| BioSample | SAMN06027798 [NCBI] |
| BioProject | PRJNA353889 [NCBI] |
| Submitter | Korea Research Institute of Chemical Technology |
| Submission Date | 2016-11-16T22:57:03.213 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1920191 |
| Isolation Source | Tomato roots |
| Geo Location | South Korea: Daejeon |
