Genome Meta Information: Janibacter indicus YFY001 (GCA_001889125.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001889125.1 | ||
| HOMD Taxon-ID | HMT-0339 | ||
| Species Name (in use by HOMD) | Janibacter indicus | ||
| Organism Name (as deposited) | HMT-339 Janibacter indicus YFY001 | ||
| Strain or Isolate | YFY001 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter; s__Janibacter indicus |
||
| Sequencing Technology | PacBio RS II system | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 3,401,189 (bp) | ||
| GC Percentage | 71.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/889/125/GCA_001889125.1_ASM188912v1 | ||
| CDS | 3259 | ||
| Genes | 3340 | ||
| mRNA | 3340 | ||
| misc RNA | 21 | ||
| rRNA | 6 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.27 % | ||
| CheckM Completeness | 94.33 % | ||
| CheckM Contamination | 5.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM188912v1 |
| GenBank Assembly Accession | GCA_001889125.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001889125.1 [NCBI] |
| BioSample | SAMN04226596 [NCBI] |
| BioProject | PRJNA300616 [NCBI] |
| Submitter | The First Affiliated Hospital of NanChang University |
| Submission Date | 2015-10-30T07:46:13.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 857417 |
| Isolation Source | blood |
| Geo Location | China: Nanchang |
