Genome Meta Information: Streptococcus pneumoniae SP61 (GCA_001896065.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001896065.1 | ||
| HOMD Taxon-ID | HMT-0734 | ||
| Species Name (in use by HOMD) | Streptococcus pneumoniae | ||
| Organism Name (as deposited) | HMT-734 Streptococcus pneumoniae SP61 | ||
| Strain or Isolate | SP61 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pneumoniae |
||
| Sequencing Technology | PacBio; Illumina MiSeq | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,071,812 (bp) | ||
| GC Percentage | 39.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/896/065/GCA_001896065.1_ASM189606v1 | ||
| CDS | 2031 | ||
| Genes | 2182 | ||
| mRNA | 2182 | ||
| misc RNA | 80 | ||
| rRNA | 12 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.58 % | ||
| CheckM Completeness | 99.62 % | ||
| CheckM Contamination | 0.31 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM189606v1 |
| GenBank Assembly Accession | GCA_001896065.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001896065.1 [NCBI] |
| BioSample | SAMN06009945 [NCBI] |
| BioProject | PRJNA353112 [NCBI] |
| Submitter | Helmholtz-Centre for Infection Research |
| Submission Date | 2016-11-10T13:36:04.493 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1313 |
| Isolation Source | thorax drainage |
| Geo Location | Germany: Aachen |
