Genome Meta Information: Corynebacterium diphtheriae DSM 44123 (GCA_001913265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001913265.1 | ||
| HOMD Taxon-ID | HMT-0591 | ||
| Species Name (in use by HOMD) | Corynebacterium diphtheriae | ||
| Organism Name (as deposited) | HMT-591 Corynebacterium diphtheriae DSM 44123 | ||
| Strain or Isolate | DSM 44123 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium diphtheriae |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 235 | ||
| Contigs |
|
||
| Total Sequence Length | 2,371,600 (bp) | ||
| GC Percentage | 53.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/913/265/GCA_001913265.1_CdipDSM44123 | ||
| CDS | 2233 | ||
| Genes | 2303 | ||
| mRNA | 2303 | ||
| misc RNA | 10 | ||
| rRNA | 6 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.5 % | ||
| CheckM Contamination | 0.12 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | CdipDSM44123 |
| GenBank Assembly Accession | GCA_001913265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001913265.1 [NCBI] |
| BioSample | SAMN04099181 [NCBI] |
| BioProject | PRJNA296455 [NCBI] |
| Submitter | Northumbria University |
| Submission Date | 2015-09-21T06:03:09.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LJXR01 |
| NCBI TaxID | 1720349 |
| Isolation Source | Not available |
| Geo Location | Not available |
