Genome Meta Information: Haemophilus parainfluenzae 65114 B Hi-3 (GCA_001949885.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001949885.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae 65114 B Hi-3 | ||
| Strain or Isolate | 65114 B Hi-3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_M |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 310 | ||
| Contigs |
|
||
| Total Sequence Length | 1,978,057 (bp) | ||
| GC Percentage | 39.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/949/885/GCA_001949885.1_ASM194988v1 | ||
| CDS | 1908 | ||
| Genes | 1996 | ||
| mRNA | 1996 | ||
| misc RNA | 36 | ||
| rRNA | 4 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.2 % | ||
| CheckM Completeness | 98.65 % | ||
| CheckM Contamination | 0.92 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM194988v1 |
| GenBank Assembly Accession | GCA_001949885.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001949885.1 [NCBI] |
| BioSample | SAMN06013565 [NCBI] |
| BioProject | PRJNA327273 [NCBI] |
| Submitter | Menzies School of Health Research |
| Submission Date | 2016-11-12T17:16:04.203 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MPJK01 |
| NCBI TaxID | 729 |
| Isolation Source | Unspecified |
| Geo Location | Australia |
