Genome Meta Information: Actinomyces naeslundii F12B1 (GCA_001956355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001956355.1 | ||
| HOMD Taxon-ID | HMT-176 | ||
| Species Name (in use by HOMD) | Actinomyces naeslundii | ||
| Organism Name (as deposited) | HMT-176 Actinomyces naeslundii F12B1 | ||
| Strain or Isolate | F12B1 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces naeslundii |
||
| Sequencing Technology | Illumina GAIIx; 454 | ||
| Genome Coverage | 12.0x | ||
| Contigs |
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| Total Sequence Length | 3,191,973 (bp) | ||
| GC Percentage | 67.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/956/355/GCA_001956355.1_ASM195635v1 | ||
| CDS | 2694 | ||
| Genes | 2766 | ||
| mRNA | 2766 | ||
| misc RNA | 14 | ||
| rRNA | 3 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.76 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.25 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM195635v1 |
| GenBank Assembly Accession | GCA_001956355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001956355.1 [NCBI] |
| BioSample | SAMN05898711 [NCBI] |
| BioProject | PRJNA347929 [NCBI] |
| Submitter | Kings College London |
| Submission Date | 2016-10-12T09:54:05.920 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MSRH01 |
| NCBI TaxID | 1655 |
| Isolation Source | Plaque (caries +) |
| Geo Location | United Kingdom: London |
