Taxon Table | Genome Table
Genome Meta Information:
Corynebacterium
jeikeium
ICIS 9 (GCA_001975925.1)
| HOMD Genome-ID |
GCA_001975925.1
|
| HOMD Taxon-ID |
HMT-0047
|
| Species Name (in use by HOMD) |
Corynebacterium jeikeium
|
| Organism Name (as deposited) |
HMT-031 Corynebacterium amycolatum ICIS 9
|
| Strain or Isolate |
ICIS 9
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;
s__Corynebacterium jeikeium_D |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
22
|
| Contigs |
Number of Contigs: 181
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,587,830 (bp) |
| GC Percentage |
58.65
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/975/925/GCA_001975925.1_ASM197592v1
|
| CDS |
2223
|
| Genes |
2296
|
| mRNA |
2296
|
| misc RNA |
13
|
| rRNA |
6
|
| tRNA |
53
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
95.44 %
|
| CheckM Completeness |
99.13 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM197592v1
|
| GenBank Assembly Accession |
GCA_001975925.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_001975925.1
[NCBI]
|
| BioSample |
SAMN06233788
[NCBI]
|
| BioProject |
PRJNA339674
[NCBI]
|
| Submitter |
Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences
|
| Submission Date |
2017-01-16T05:31:03.460
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
MTPT01
|
| NCBI TaxID |
43765
|
| Isolation Source |
female urogenital tract
|
| Geo Location |
Russia
|
