Genome Meta Information: Streptococcus oralis S.MIT/ORALIS-351 (GCA_001983955.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001983955.1 | ||
| HOMD Taxon-ID | HMT-0707 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-707 Streptococcus oralis subsp. oralis S.MIT/ORALIS-351 | ||
| Strain or Isolate | S.MIT/ORALIS-351 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_H |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 23.5 | ||
| Contigs |
|
||
| Total Sequence Length | 1,966,910 (bp) | ||
| GC Percentage | 40.98 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/983/955/GCA_001983955.1_ASM198395v1 | ||
| CDS | 1848 | ||
| Genes | 1964 | ||
| mRNA | 1964 | ||
| misc RNA | 44 | ||
| rRNA | 12 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.49 % | ||
| CheckM Completeness | 98.72 % | ||
| CheckM Contamination | 0.27 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM198395v1 |
| GenBank Assembly Accession | GCA_001983955.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001983955.1 [NCBI] |
| BioSample | SAMN06179980 [NCBI] |
| BioProject | PRJNA358614 [NCBI] |
| Submitter | University of California San Francisco |
| Submission Date | 2016-12-23T11:57:05.340 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1303 |
| Isolation Source | blood |
| Geo Location | Spain: Barcelona |
