Genome Meta Information: Corynebacterium jeikeium ATCC 43734 (GCA_001999385.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001999385.1 | ||
| HOMD Taxon-ID | HMT-0047 | ||
| Species Name (in use by HOMD) | Corynebacterium jeikeium | ||
| Organism Name (as deposited) | HMT-047 Corynebacterium jeikeium ATCC 43734 | ||
| Strain or Isolate | ATCC 43734 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium jeikeium |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 70 | ||
| Contigs |
|
||
| Total Sequence Length | 2,447,019 (bp) | ||
| GC Percentage | 61.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/999/385/GCA_001999385.1_ASM199938v1 | ||
| CDS | 2138 | ||
| Genes | 2200 | ||
| mRNA | 0 | ||
| misc RNA | 6 | ||
| rRNA | 4 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.53 % | ||
| CheckM Contamination | 0.97 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM199938v1 |
| GenBank Assembly Accession | GCA_001999385.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001999385.1 [NCBI] |
| BioSample | SAMN05721786 [NCBI] |
| BioProject | PRJNA341407 [NCBI] |
| Submitter | California Department of Public Health |
| Submission Date | 2016-08-31T18:50:07.153 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MTGK01 |
| NCBI TaxID | 38289 |
| Isolation Source | missing |
| Geo Location | missing |
