Genome Meta Information: Dolosigranulum pigrum 15S00348 (GCA_002005795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002005795.1 | ||
| HOMD Taxon-ID | HMT-0813 | ||
| Species Name (in use by HOMD) | Dolosigranulum pigrum | ||
| Organism Name (as deposited) | HMT-813 Dolosigranulum pigrum 15S00348 | ||
| Strain or Isolate | 15S00348 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum; s__Dolosigranulum pigrum |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 167.3 | ||
| Contigs |
|
||
| Total Sequence Length | 2,121,027 (bp) | ||
| GC Percentage | 39.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/005/795/GCA_002005795.1_ASM200579v1 | ||
| CDS | 2160 | ||
| Genes | 2311 | ||
| mRNA | 2311 | ||
| misc RNA | 75 | ||
| rRNA | 17 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.6 % | ||
| CheckM Completeness | 83.06 % | ||
| CheckM Contamination | 0.59 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM200579v1 |
| GenBank Assembly Accession | GCA_002005795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002005795.1 [NCBI] |
| BioSample | SAMN06236401 [NCBI] |
| BioProject | PRJNA362210 [NCBI] |
| Submitter | California Department of Public Health |
| Submission Date | 2017-01-17T14:50:05.523 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | MUYF01 |
| NCBI TaxID | 29394 |
| Isolation Source | missing |
| Geo Location | USA: California, Santa Rosa |
