Genome Meta Information: Streptococcus pseudopneumoniae CCUG 62647 (GCA_002014925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002014925.1 | ||
| HOMD Taxon-ID | HMT-0425 | ||
| Species Name (in use by HOMD) | Streptococcus pseudopneumoniae | ||
| Organism Name (as deposited) | HMT-425 Streptococcus pseudopneumoniae CCUG 62647 | ||
| Strain or Isolate | CCUG 62647 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pseudopneumoniae |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 138 | ||
| Contigs |
|
||
| Total Sequence Length | 2,115,191 (bp) | ||
| GC Percentage | 39.98 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/014/925/GCA_002014925.1_ASM201492v1 | ||
| CDS | 2044 | ||
| Genes | 2162 | ||
| mRNA | 2162 | ||
| misc RNA | 71 | ||
| rRNA | 3 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.84 % | ||
| CheckM Completeness | 97.64 % | ||
| CheckM Contamination | 0.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM201492v1 |
| GenBank Assembly Accession | GCA_002014925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002014925.1 [NCBI] |
| BioSample | SAMN06299414 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2017-02-06T11:13:04.496 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MUXQ01 |
| NCBI TaxID | 257758 |
| Isolation Source | pharynx, healthy adolescent |
| Geo Location | Denmark: Aarhus |
