Genome Meta Information: Haemophilus paraphrohaemolyticus CCUG 3718 (GCA_002015045.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002015045.1 | ||
| HOMD Taxon-ID | HMT-0035 | ||
| Species Name (in use by HOMD) | Haemophilus paraphrohaemolyticus | ||
| Organism Name (as deposited) | HMT-035 Haemophilus paraphrohaemolyticus CCUG 3718 | ||
| Strain or Isolate | CCUG 3718 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A; s__Haemophilus_A paraphrohaemolyticus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 83 | ||
| Contigs |
|
||
| Total Sequence Length | 2,057,591 (bp) | ||
| GC Percentage | 40.84 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/015/045/GCA_002015045.1_ASM201504v1 | ||
| CDS | 2000 | ||
| Genes | 2086 | ||
| mRNA | 2086 | ||
| misc RNA | 30 | ||
| rRNA | 4 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.36 % | ||
| CheckM Contamination | 0.11 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM201504v1 |
| GenBank Assembly Accession | GCA_002015045.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002015045.1 [NCBI] |
| BioSample | SAMN06308708 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2017-02-06T17:25:03.136 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MUXX01 |
| NCBI TaxID | 736 |
| Isolation Source | sputum |
| Geo Location | United Kingdom: Leeds |
