Genome Meta Information: Veillonella atypica OK5 (GCA_002082765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002082765.1 | ||
| HOMD Taxon-ID | HMT-0524 | ||
| Species Name (in use by HOMD) | Veillonella atypica | ||
| Organism Name (as deposited) | HMT-524 Veillonella atypica OK5 | ||
| Strain or Isolate | OK5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella atypica |
||
| Sequencing Technology | Illumina MiSeq; Illumina NextSeq | ||
| Genome Coverage | 157 | ||
| Contigs |
|
||
| Total Sequence Length | 2,071,952 (bp) | ||
| GC Percentage | 39.11 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/082/765/GCA_002082765.1_ASM208276v1 | ||
| CDS | 1834 | ||
| Genes | 1913 | ||
| mRNA | 1913 | ||
| misc RNA | 20 | ||
| rRNA | 12 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.13 % | ||
| CheckM Completeness | 97.99 % | ||
| CheckM Contamination | 1.98 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM208276v1 |
| GenBank Assembly Accession | GCA_002082765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002082765.1 [NCBI] |
| BioSample | SAMN06644703 [NCBI] |
| BioProject | PRJNA380512 [NCBI] |
| Submitter | University of Oklahoma HSC |
| Submission Date | 2017-03-26T15:29:03.389 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 39777 |
| Isolation Source | |
| Geo Location | USA |
