Genome Meta Information: Aerococcus viridans FDAARGOS_249 (GCA_002083135.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002083135.2 | ||
| HOMD Taxon-ID | HMT-312 | ||
| Species Name (in use by HOMD) | Aerococcus viridans | ||
| Organism Name (as deposited) | HMT-312 Aerococcus viridans FDAARGOS_249 | ||
| Strain or Isolate | FDAARGOS_249 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus; s__Aerococcus viridans_C |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 1877.0x | ||
| Contigs |
|
||
| Total Sequence Length | 2,003,760 (bp) | ||
| GC Percentage | 39.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/083/135/GCA_002083135.2_ASM208313v2 | ||
| CDS | 1776 | ||
| Genes | 1887 | ||
| mRNA | 1887 | ||
| misc RNA | 33 | ||
| rRNA | 19 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.62 % | ||
| CheckM Completeness | 98.9 % | ||
| CheckM Contamination | 1.94 % | ||
| CheckM2 Completeness | 99.97 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM208313v2 |
| GenBank Assembly Accession | GCA_002083135.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002083135.2 [NCBI] |
| BioSample | SAMN04875575 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center |
| Submission Date | 2016-04-20T14:41:11.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NBTM02 |
| NCBI TaxID | 1377 |
| Isolation Source | peripheral blood |
| Geo Location | USA:DC |
