Genome Meta Information: Streptococcus pseudopneumoniae CCUG 49455 (GCA_002087075.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002087075.1 | ||
| HOMD Taxon-ID | HMT-0425 | ||
| Species Name (in use by HOMD) | Streptococcus pseudopneumoniae | ||
| Organism Name (as deposited) | HMT-425 Streptococcus pseudopneumoniae CCUG 49455 | ||
| Strain or Isolate | CCUG 49455 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pseudopneumoniae |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 154 | ||
| Contigs |
|
||
| Total Sequence Length | 2,172,620 (bp) | ||
| GC Percentage | 39.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/087/075/GCA_002087075.1_ASM208707v1 | ||
| CDS | 2149 | ||
| Genes | 2270 | ||
| mRNA | 2270 | ||
| misc RNA | 76 | ||
| rRNA | 3 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.66 % | ||
| CheckM Contamination | 0.82 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM208707v1 |
| GenBank Assembly Accession | GCA_002087075.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002087075.1 [NCBI] |
| BioSample | SAMN06459226 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2017-02-28T11:05:05.550 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MWSM01 |
| NCBI TaxID | 889205 |
| Isolation Source | Low respiratory tract sample |
| Geo Location | Canada: Nova Scotia, Halifax |
