Genome Meta Information: Streptococcus oralis 859 (GCA_002093575.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002093575.1 | ||
| HOMD Taxon-ID | HMT-0071 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-071 Streptococcus oralis subsp. tigurinus 859 | ||
| Strain or Isolate | 859 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_CH |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 463 | ||
| Contigs |
|
||
| Total Sequence Length | 2,036,380 (bp) | ||
| GC Percentage | 40.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/093/575/GCA_002093575.1_ASM209357v1 | ||
| CDS | 2006 | ||
| Genes | 2139 | ||
| mRNA | 2139 | ||
| misc RNA | 76 | ||
| rRNA | 4 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.61 % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0.28 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM209357v1 |
| GenBank Assembly Accession | GCA_002093575.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002093575.1 [NCBI] |
| BioSample | SAMN04283924 [NCBI] |
| BioProject | PRJNA302888 [NCBI] |
| Submitter | Genomic Research Laboratory (GRL) |
| Submission Date | 2015-11-20T11:48:14.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LNVH01 |
| NCBI TaxID | 1077464 |
| Isolation Source | nasopharynx |
| Geo Location | not applicable |
