Genome Meta Information: Streptococcus mitis RH_17439_08 (GCA_002096855.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002096855.1 | ||
| HOMD Taxon-ID | HMT-677 | ||
| Species Name (in use by HOMD) | Streptococcus mitis | ||
| Organism Name (as deposited) | HMT-677 Streptococcus mitis RH_17439_08 | ||
| Strain or Isolate | RH_17439_08 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mitis_Y |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 5.7x | ||
| Contigs |
|
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| Total Sequence Length | 1,908,049 (bp) | ||
| GC Percentage | 40.28 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/855/GCA_002096855.1_ASM209685v1 | ||
| CDS | 1856 | ||
| Genes | 1964 | ||
| mRNA | 1964 | ||
| misc RNA | 58 | ||
| rRNA | 5 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.65 % | ||
| CheckM Completeness | 99.74 % | ||
| CheckM Contamination | 0.29 % | ||
| CheckM2 Completeness | 99.97 % | ||
| CheckM2 Contamination | 0.38 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) |
View in Anvi`o:
Streptococcus__mitis__HMT_677
(Interactive)
View SVG Image |
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM209685v1 |
| GenBank Assembly Accession | GCA_002096855.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002096855.1 [NCBI] |
| BioSample | SAMN06705601 [NCBI] |
| BioProject | PRJNA304678 [NCBI] |
| Submitter | Slagelse Hospital |
| Submission Date | 2017-04-10T14:37:06.295 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NCVH01 |
| NCBI TaxID | 28037 |
| Isolation Source | blood |
| Geo Location | Denmark: Capital Region of Den |
