Genome Meta Information: Staphylococcus lugdunensis C_33 (GCA_002096975.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002096975.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis C_33 | ||
| Strain or Isolate | C_33 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 553 | ||
| Contigs |
|
||
| Total Sequence Length | 2,500,687 (bp) | ||
| GC Percentage | 33.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/096/975/GCA_002096975.1_ASM209697v1 | ||
| CDS | 2332 | ||
| Genes | 2478 | ||
| mRNA | 2478 | ||
| misc RNA | 88 | ||
| rRNA | 5 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.55 % | ||
| CheckM Completeness | 97.35 % | ||
| CheckM Contamination | 0.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM209697v1 |
| GenBank Assembly Accession | GCA_002096975.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002096975.1 [NCBI] |
| BioSample | SAMN06704792 [NCBI] |
| BioProject | PRJNA382365 [NCBI] |
| Submitter | EA7290 |
| Submission Date | 2017-04-10T11:44:05.813 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28035 |
| Isolation Source | Cutaneous swab |
| Geo Location | France: strasbourg |
