Genome Meta Information: Streptococcus mutans HM (GCA_002157665.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002157665.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans HM | ||
| Strain or Isolate | HM | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | illumina GAII | ||
| Genome Coverage | 179 | ||
| Contigs |
|
||
| Total Sequence Length | 2,003,112 (bp) | ||
| GC Percentage | 37.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/157/665/GCA_002157665.1_ASM215766v1 | ||
| CDS | 1842 | ||
| Genes | 1904 | ||
| mRNA | 1904 | ||
| misc RNA | 26 | ||
| rRNA | 4 | ||
| tRNA | 31 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.16 % | ||
| CheckM Completeness | 99.36 % | ||
| CheckM Contamination | 1.71 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM215766v1 |
| GenBank Assembly Accession | GCA_002157665.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002157665.1 [NCBI] |
| BioSample | SAMD00078033 [NCBI] |
| BioProject | PRJDB5660 [NCBI] |
| Submitter | Department of Pediatric Dentistry, Nagasaki University Graduate School of Biomedical Sciences |
| Submission Date | 2017-05-03T01:00:42.170 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | BDOS01 |
| NCBI TaxID | 1309 |
| Isolation Source | |
| Geo Location | Japan: Nagasaki |
