Genome Meta Information: Lacticaseibacillus casei LC5 (GCA_002192215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002192215.1 | ||
| HOMD Taxon-ID | HMT-0568 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus casei | ||
| Organism Name (as deposited) | HMT-568 Lacticaseibacillus casei LC5 | ||
| Strain or Isolate | LC5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus casei |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 246 | ||
| Contigs |
|
||
| Total Sequence Length | 3,132,867 (bp) | ||
| GC Percentage | 47.92 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/192/215/GCA_002192215.1_ASM219221v1 | ||
| CDS | 2912 | ||
| Genes | 3016 | ||
| mRNA | 3016 | ||
| misc RNA | 28 | ||
| rRNA | 15 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.92 % | ||
| CheckM Completeness | 94 % | ||
| CheckM Contamination | 4.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM219221v1 |
| GenBank Assembly Accession | GCA_002192215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002192215.1 [NCBI] |
| BioSample | SAMN05631198 [NCBI] |
| BioProject | PRJNA340077 [NCBI] |
| Submitter | Korea Food Research Institute |
| Submission Date | 2016-08-25T07:41:03.280 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1582 |
| Isolation Source | feces |
| Geo Location | South Korea: Seoul |
