Genome Meta Information: Fusobacterium polymorphum KCOM 1001 (GCA_002204435.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002204435.1 | ||
| HOMD Taxon-ID | HMT-0202 | ||
| Species Name (in use by HOMD) | Fusobacterium polymorphum | ||
| Organism Name (as deposited) | HMT-202 Fusobacterium polymorphum KCOM 1001 | ||
| Strain or Isolate | KCOM 1001 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium; s__Fusobacterium polymorphum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 1370 | ||
| Contigs |
|
||
| Total Sequence Length | 2,523,644 (bp) | ||
| GC Percentage | 27.01 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/204/435/GCA_002204435.1_ASM220443v1 | ||
| CDS | 2372 | ||
| Genes | 2455 | ||
| mRNA | 2455 | ||
| misc RNA | 25 | ||
| rRNA | 12 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.6 % | ||
| CheckM Completeness | 98.49 % | ||
| CheckM Contamination | 0.15 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 4 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM220443v1 |
| GenBank Assembly Accession | GCA_002204435.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002204435.1 [NCBI] |
| BioSample | SAMN06947082 [NCBI] |
| BioProject | PRJNA386424 [NCBI] |
| Submitter | Chosun University |
| Submission Date | 2017-05-12T02:22:05.183 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NHRT01 |
| NCBI TaxID | 76857 |
| Isolation Source | subgingival plaque, gingivitis |
| Geo Location | South Korea: Gwangju |
