Genome Meta Information: Staphylococcus lugdunensis K93G (GCA_002250095.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002250095.2 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis K93G | ||
| Strain or Isolate | K93G | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 293 | ||
| Contigs |
|
||
| Total Sequence Length | 2,584,152 (bp) | ||
| GC Percentage | 33.81 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/250/095/GCA_002250095.2_ASM225009v2 | ||
| CDS | 2400 | ||
| Genes | 2577 | ||
| mRNA | 2577 | ||
| misc RNA | 86 | ||
| rRNA | 20 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.44 % | ||
| CheckM Completeness | 97.3 % | ||
| CheckM Contamination | 0.49 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM225009v2 |
| GenBank Assembly Accession | GCA_002250095.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002250095.2 [NCBI] |
| BioSample | SAMN05591932 [NCBI] |
| BioProject | PRJNA338738 [NCBI] |
| Submitter | HKU |
| Submission Date | 2016-08-18T23:27:03.926 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28035 |
| Isolation Source | Groin |
| Geo Location | Hong Kong |
