Genome Meta Information: Streptococcus intermedius TYG1620 (GCA_002356055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002356055.1 | ||
| HOMD Taxon-ID | HMT-0644 | ||
| Species Name (in use by HOMD) | Streptococcus intermedius | ||
| Organism Name (as deposited) | HMT-644 Streptococcus intermedius TYG1620 | ||
| Strain or Isolate | TYG1620 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus intermedius |
||
| Sequencing Technology | Illumina GAIIx; MiSeq; ABI 3730xl | ||
| Genome Coverage | 1000 | ||
| Contigs |
|
||
| Total Sequence Length | 2,006,877 (bp) | ||
| GC Percentage | 37.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/356/055/GCA_002356055.1_ASM235605v1 | ||
| CDS | 1957 | ||
| Genes | 2066 | ||
| mRNA | 2066 | ||
| misc RNA | 35 | ||
| rRNA | 12 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.34 % | ||
| CheckM Completeness | 95.9 % | ||
| CheckM Contamination | 2.2 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM235605v1 |
| GenBank Assembly Accession | GCA_002356055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002356055.1 [NCBI] |
| BioSample | SAMD00031898 [NCBI] |
| BioProject | PRJDB3973 [NCBI] |
| Submitter | Pathogen Genomics Center, National Institute of Infectious Diseases |
| Submission Date | 2016-12-03T01:00:21.280 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1338 |
| Isolation Source | |
| Geo Location | not applicable |
